Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.400 AlteredExpression group LHGDN In addition, induction of oxidative stress with antimycin A inhibited Pax-3 expression and increased neural tube defects. 12739027 2003
Entrez Id: 2348
Gene Symbol: FOLR1
FOLR1
0.400 AlteredExpression group BEFREE Furthermore, doubly heterozygous mouse embryos lacking one copy each of Shroom3 and Folr1 exhibit a low rate of neural tube defects and also have lower levels of activated myosin light chain and MLCK. 30670450 2019
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.400 AlteredExpression group BEFREE Glucose and glucosamine inhibited expression of Pax-3, a gene required for neural tube closure both in vivo and in vitro, and increased neural tube defects (NTDs) in vivo; these effects were prevented by GSH ethyl ester. 15329829 2004
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.400 AlteredExpression group BEFREE In brain tissue, levels of PAX3 were significantly reduced in both encephalocele and spina bifida subtypes; the expression levels of cleaved caspase 3(17 kD) of encephalocele cases and cleaved caspase 8(47/45 kD) in spina bifida cases were higher than in controls; no difference was found in the expression of p53 or caspase 9 between NTDs and controls. 28786179 2017
Entrez Id: 2348
Gene Symbol: FOLR1
FOLR1
0.400 AlteredExpression group BEFREE In NTDs, there was an adaptive up-regulation of folate transporters mainly reduced folate carrier (p < 0.001) and folate receptor alpha (p < 0.001). 30941645 2019
Entrez Id: 57822
Gene Symbol: GRHL3
GRHL3
0.370 AlteredExpression group BEFREE These findings suggest that residual Grhl3 expression in ct/ct mice may be required for inositol rescue of folate-resistant NTDs. 14608380 2003
Entrez Id: 2350
Gene Symbol: FOLR2
FOLR2
0.340 AlteredExpression group BEFREE In NTDs, there was an adaptive up-regulation of folate transporters mainly reduced folate carrier (p < 0.001) and folate receptor alpha (p < 0.001). 30941645 2019
Entrez Id: 10653
Gene Symbol: SPINT2
SPINT2
0.310 AlteredExpression group BEFREE We found that the myristoylated alanine-rich C-kinase substrate, Kunitz-type protease inhibitor 2, and apolipoprotein B-100 protein levels were decreased in both embryos and the sera of pregnant Sprague-Dawley rats carrying embryos with NTDs. 28695418 2017
Entrez Id: 4548
Gene Symbol: MTR
MTR
0.100 AlteredExpression group BEFREE Genetic polymorphisms in methylenetetrahydrofolate reductase and methionine synthase, folate levels in red blood cells, and risk of neural tube defects. 10323741 1999
Entrez Id: 174
Gene Symbol: AFP
AFP
0.100 AlteredExpression group BEFREE The risk of an open neural tube defect or other serious fetal abnormality was 60% when alpha-fetoprotein levels measured greater than or equal to +3 and 86% for levels greater than or equal to +5 SD. 6205588 1984
Entrez Id: 4552
Gene Symbol: MTRR
MTRR
0.100 AlteredExpression group BEFREE A much-reduced expression of MTHFR (p < 0.01) and an abnormally high expression of methionine synthase reductase (p < 0.001) were observed in the NTD group. 30941645 2019
Entrez Id: 4548
Gene Symbol: MTR
MTR
0.100 AlteredExpression group BEFREE Vitamin B-12 and liver activity and expression of methionine synthase are decreased in fetuses with neural tube defects. 30848279 2019
Entrez Id: 4552
Gene Symbol: MTRR
MTRR
0.100 AlteredExpression group BEFREE MTRR, combined with a low level of vitamin B12, increases the risk of NTD and of having a child with NTD in Canada, while TCN 776 GG and MTRR 66 GG mutated genotypes associated with the MTHFR 677 CC wild-type are predictors of NTD cases in Sicily. 14656028 2003
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.080 AlteredExpression group BEFREE Recent studies show that the delicate balance of p53 expression is important for neural tube defects, neuronal degeneration, embryonic lethality, as well as differentiation and dedifferentiation. 29895189 2018
Entrez Id: 25902
Gene Symbol: MTHFD1L
MTHFD1L
0.080 AlteredExpression group BEFREE Our results indicate that miR-9 and miR-197 specifically downregulate MTHFD1L levels in HEK293 and MCF-7 cells and that SNPrs7646 significantly affects miR-197 binding affinity to the MTHFD1L 3' UTR, causing more efficient posttranscriptional gene repression in the presence of the allele that is associated with increased risk of NTDs. 24123340 2014
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.080 AlteredExpression group BEFREE In brain tissue, levels of PAX3 were significantly reduced in both encephalocele and spina bifida subtypes; the expression levels of cleaved caspase 3(17 kD) of encephalocele cases and cleaved caspase 8(47/45 kD) in spina bifida cases were higher than in controls; no difference was found in the expression of p53 or caspase 9 between NTDs and controls. 28786179 2017
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.080 AlteredExpression group BEFREE Expressions of proliferating cell nuclear antigen and phosphohistone H3 were significantly decreased in NTDs, while phosphorylated replication protein A2, P53 and Caspase3 were significantly increased in NTDs compared with control. 29258758 2018
Entrez Id: 5156
Gene Symbol: PDGFRA
PDGFRA
0.060 AlteredExpression group LHGDN The current identification of cis-acting elements in the PDGFRA promoter and the transcription factors that bind them, provides a new strategy for the identification of genes that are potentially involved in neural tube defects. 16126374 2005
Entrez Id: 5156
Gene Symbol: PDGFRA
PDGFRA
0.060 AlteredExpression group BEFREE Since functional inactivation of Prx genes has been associated with NTDs in mice, these data support a model in which improper PDGFRA expression as a result of mutations in or altered binding of its upstream regulators may be causally related to NTDs. 12393181 2002
Entrez Id: 5156
Gene Symbol: PDGFRA
PDGFRA
0.060 AlteredExpression group BEFREE Aberrant expression of the platelet-derived growth factor alpha-receptor (PDGFRA) gene has been associated with various diseases, including neural tube defects and gliomas. 18464291 2008
Entrez Id: 5156
Gene Symbol: PDGFRA
PDGFRA
0.060 AlteredExpression group BEFREE 2-4), whereas mutant forms of Pax-1 that have been associated with NTDs cause deregulated activation of the human PDGFRA promoter. 11175793 2001
Entrez Id: 56288
Gene Symbol: PARD3
PARD3
0.050 AlteredExpression group BEFREE Consistent with this hypothesis, interference with Par3 activity inhibited asymmetric distribution of PCP junctional complexes and caused neural tube defects. 30256191 2018
Entrez Id: 841
Gene Symbol: CASP8
CASP8
0.040 AlteredExpression group BEFREE In brain tissue, levels of PAX3 were significantly reduced in both encephalocele and spina bifida subtypes; the expression levels of cleaved caspase 3(17 kD) of encephalocele cases and cleaved caspase 8(47/45 kD) in spina bifida cases were higher than in controls; no difference was found in the expression of p53 or caspase 9 between NTDs and controls. 28786179 2017
Entrez Id: 842
Gene Symbol: CASP9
CASP9
0.030 AlteredExpression group BEFREE In brain tissue, levels of PAX3 were significantly reduced in both encephalocele and spina bifida subtypes; the expression levels of cleaved caspase 3(17 kD) of encephalocele cases and cleaved caspase 8(47/45 kD) in spina bifida cases were higher than in controls; no difference was found in the expression of p53 or caspase 9 between NTDs and controls. 28786179 2017
Entrez Id: 4082
Gene Symbol: MARCKS
MARCKS
0.020 AlteredExpression group BEFREE MRP deficiency leads to neural tube defects in brain development; MARCKS overexpression strongly depresses the proliferation of cancer cells. 10736562 2000